NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272425_1003974

Scaffold Ga0272425_1003974


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1003974 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20654
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (15.79%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008115Metagenome338Y
F048017Metagenome148Y
F066295Metagenome126Y
F068292Metagenome124Y
F096307Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_100397410F066295N/ALKTRLQAKENTSSDFIYFERFKSQKILDFSLFTDEKNFTXKNXYEKIQNKLKINVDLFSNERVKLSYVHFRLFDDAAEITQTRREHDCVNLYKIIDDLLKELAQLFNDLNKKVNFCKEYYNLIQEFKKFNEFYTQFQRLSFYLDYHEKQLIVDLKDKINSRFXFVXVN
Ga0272425_100397413F096307GAGMTKTLRIQKKEDIKDKKNMLYIVVTQIDASLKEDVLKHKKDVDLKDVCDTKKCVCHRNLLITCNTKKYVCLKDNRSXLEDARKEKRCXVLSESNLNQI
Ga0272425_100397416F068292N/ALNSLIFTETDDSIXKTXNIKIADKLDVNANHYSTEKIRIAYVIFRLEDNADQQIYAKRRVDAFSLYQSLSELLKHLKEIYEDQNLTRKCRCKYVALKQLNKLFSSFYSEFTRIFSFLNYDDVILMNDIQNKINNHLQNALSVCLIEFSSLDKLKIFLQDVNNKQQVNYQLRDEQXTVKSIAASKKRFVSSSTSASVLTTSYVQLATFFTLESEQSRM
Ga0272425_10039745F008115N/AMNFITELSLSESYNVICTIICCLIKECHYVFCHXEDDDISVKEMIXIMLXNVYRLHNLLSSIVLNRDFQFILTMXKSLCKRLRITASLFTVYHSEIDDQSKRVNQDVERELRIYCNYMQNDXVKXISMMKFSDNFNIFSITSMTFFYFNKEFHFRMSFDSDTTDYETTCERLKARKVDDIIIXMKKLLNFNCQQLKKTKLIIEVQINKHKXDVIYEVNDXVXLSFRNLKTTRLCKDLKDKQLDFYQITIKVSIFYHLHLSVSMKHLHSMFSSKLLXSYSENSLSEQHSESLRSITIKDDEYXEINDILNFRCYRDQIQYKVKXTDLDKDDEXYYVNKEKFDDSEKVLNEFHKLYSNKSR
Ga0272425_10039746F048017N/AMKNKQLSXQQVNYLNILSKFNFQIIFRSDKMNTKVDALIKMSLMNASESAQRLEDRFQTILTLDKVNVLSIESKANLYQXVXIINQTNEFCSEYRQAMNENKLKFHITKLNNCEIIDDVLFRKDLLXVFENMHTKLLQEVHDQSSISHFDNKXIIDLVQRFYYWSDHXVTIQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.