NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1004582

Scaffold Ga0272425_1004582


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1004582 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18233
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (25.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010214Metagenome306Y
F033265Metagenome177Y
F052973Metagenome141Y
F081945Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_100458210F010214GAGMSVLFIYDASSLLCSSLMIFYTMMFRFNSQFKDERCFLCTHDAHDCNVCKAAFSCSMIVIHCAEKYVMKERCTRXKDKVXLYXVILFFSXFDLCHVDVEXIVSINVQSQSFNVXLXSMKENVFXLFSXTLDFSRRQIYDLTSSKEDEFKSSQYISVINESLLLRAL
Ga0272425_100458212F010214GAGMRVSVLFDYDASSLLCSSLTIFYITMFRFDFRFKDERRFLCTCDAHDCNIRKAVFSYSMIVIHXAEKYVMKERCTRXEDKVXLYXVTLFFSXFDLCHVDVEXIVSIDVQSQSFDVXLXSMKENAFXSFSXALDFSCE
Ga0272425_100458215F033265N/AMFSVIEKTMTSQLKKRFESCYETSINCMIYSVLLFQTKTLNSYQLCEKVFASDXESQLVYSQFIILRSMINXKESIKMLNANLESTAITCRMTESNEYLXXNSATIQISSXSLQXFSSTLIKNFTLKXVSIQIXLTTKQLVNDLKLEKQMILSFKXKSY
Ga0272425_100458218F052973N/AMFKDCARLERDVFVTREECDVDKQNVGERKECFKRKRD
Ga0272425_10045828F081945N/AMFSCSFTEEHFEEFRNRFSQISDADSLKSRTKSSSAASFIHEDDESFTETIIFLVFYEIXKARSLALNEETD
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