NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1004814

Scaffold Ga0272425_1004814


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1004814 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17491
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (13.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007840Metagenome343Y
F041516Metagenome159Y
F094622Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_100481412F094622N/AMSKQKVYLNNSDSKNDVTAIAMKMNXELNKRLRRSTLIITHHDELKELVAKTKHFADVATVNQECHEKIYKVYSDSQTSLKTVKVMISTKDQTHLQXIQIVHESIQS
Ga0272425_100481415F007840N/AMIDAIERQNNTRESIESTARLVELLDDLQLIKYASFISINRISDKEPSLIARESNRSRESINSQIKQQKRLHLLLSSIALRSISFF
Ga0272425_10048148F041516N/AMIQKAIHIHEAYNLSFRNHKIIHEKENLSNIKKMLHMSRESILVENFNLHHFTXEESFYS
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