NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1004989

Scaffold Ga0272425_1004989


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1004989 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17019
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (31.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Umbilicariomycetidae → Umbilicariales → Umbilicariaceae → Lasallia → Lasallia pustulata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065268Metagenome127Y
F083460Metagenome112Y
F098340Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_100498913F098340N/AMIKVAAYXTLVKNKKIKIFFLIISEINKALSSVEDFAKLNEIISVMSLNELKKKLLIIYHDFLNVFDREKTTQLSSHQSYNHKIKLKDES
Ga0272425_100498914F065268N/AMTRSTASESVSIARYELQNARRESLLPQNXAASEEEKDINAMSNTEEKNMNALFFDHKMIKISISTELNAXINAYEADDIVVFIKYIC
Ga0272425_10049896F083460GAGMQLQMKSSDSQAYSDALLELNASSIKYAMRRRLHELSNHRINHEESQGNSENDDENKAAEAV
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