NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1005945

Scaffold Ga0272425_1005945


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1005945 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14519
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (10.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011463Metagenome290Y
F017941Metagenome237Y
F036036Metagenome170Y
F046102Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_100594510F017941N/AMSNQMKIIDLKKNINESIYKQIFKTNEIDENCMLLCEAIAKDETQYENIK
Ga0272425_100594514F036036N/AMFISLIHHLFSCFDQSFASEDQCLVHVIKYIFDLSNLQTFVSAFILNDVRVEVYMRVKVLIHEEKDQENDXKQDIIVNKLNHE
Ga0272425_100594516F017941N/AMKIADLKKNINESIYKQIFKTNEINENCMLLREAIAKDEA
Ga0272425_10059452F011463N/ALKKIKLIIEVQINKYRRNVIYEVNDXVXLSFKNVKTARLCKDLKDKQLNFYQITVKVSIFYHFHLSVSMKHLHSMFSSKLLXLYSKNSLSEQHSESLKSITIKNDEHXKINDILNFRCYQDXIQYKVKXKDLNKNDKXYYVDKEKFNDSEKVLNEFHKLYSSKLC
Ga0272425_10059456F046102N/ALCIHFLSQXDHHVKRKKEIIYREIEEXDKKLVTFIKDVMKDVLISSTMNSLNDLFASKSLTTECVLFSNEIIYLLKSLIDIEAADYSFIDELITQNVYDHLQIESLTLIKAKSIQEFDDHYVKKLITHAIYLNLTVQDHMKHFIFMLITXLNQHQMILKKIXMNKIKMIIDMKDDCFQFSSFKTHIKTFIKAHSTVLSSKKITIKQKSSIST
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