NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1007821

Scaffold Ga0272425_1007821


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1007821 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11193
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035571Metagenome171Y
F044227Metagenome154Y
F087979Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_10078211F044227N/AMQLQIKSSNDEACTHALLELIAFAIKNATRCXLLKLSNNHHHHEEFQSNSEDDDENEALEAI
Ga0272425_10078212F035571GAGMTXITFVKXTCISLHAYLISYVQLLIQLCNVILFYNMFKXTCSELIYVFVSKVLMLTLLNISVTXCRVXFXSVSNLHSLLNSSFFLSRXCQTDASNAISDLITIEYTCFAFVKIASHVKTLRQLSVSIFVMXFVFIYQICTSHCSFMFSCIFRTCTFNFNLITELSIYMLIIMSNLFNFLVKCVSLLKIYCIHCMQHT
Ga0272425_10078216F087979N/AVKEKNENLTFIYINQAESRLNNSFIDLRLQKYMYMIKTELLKLN
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