NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1007859

Scaffold Ga0272425_1007859


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1007859 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11150
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009446Metagenome317Y
F035137Metagenome172Y
F098337Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_10078594F098337AGGMPMTPHTLAATLALFDGDADEATIVARIVALRQDPDWRVALHQGHKRCAIALTHGPTDHLYRVYLDRVKGAEGVVWRRIA
Ga0272425_10078595F035137AGGAGMRGKWERKSDTLWTYRLAGAARPYGYVVQYRDTGRSDADWDATVTTGRLDDDTTVAERVSFDKAKGAIEQDAQQHADRV
Ga0272425_10078598F009446AGGVSDLGEDLTRAYEARVAATNVELTPAAVRAVVHELGGGEGRSQVAQGNRILAGQLGVSVRTVQRWQKEGGEARSVARSTPGLRISVQGIATEQQRAANARAFRERVQEQGLDVGACRVMVLVYNEDRARPRNIGDMHIAGDALTEALDALEEGDTAAAAEAFGDAWLETYGMDVDASVTDVVGTFALDV
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