Scaffold Ga0272425_1011180

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0272425_1011180

Scaffold Ga0272425_1011180

Overview

Basic Information
Taxon OID	3300031453 Open in IMG/M
Scaffold ID	Ga0272425_1011180 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7997
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (7.69%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Umbilicariomycetidae → Umbilicariales → Umbilicariaceae → Lasallia → Lasallia pustulata	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.8	Long. (^o)	159.9	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F009580	Metagenome	315	Y
F068292	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_101118011	F009580	AGCAG	MIEVRVKRLKLVDKMICIQISERDLAQKLNFSCREXDFLIYTDDVIIVDVHDMQSKEFLIXAFFNNFAXMLQLAVVAQLLLVANFLDLRNNQNLILNDDNDKA
Ga0272425_101118012	F001951	N/A	MIMTKLRFIDSSRNEKERDKDTVKTTVTEIMIFELKKLLVNAKMLLTLMSEIMMKMKQD
Ga0272425_10111803	F068292	N/A	LIYHSKVERSLTFEAHFQXESSTLSDNENKNDYHKFVKLLNSLIFIKTDDSIXETXNIKITNKLDVNVNHYSTEKICIIYVIFRLKDDADQQIYAKHYVDAFSFYQSLSELLKHLKEIYEDQNLIXKCHCKYIALKQLNKLFSFFYSKFTRIFNFLNYDDIILMNNIQNKINNHLQNVLSVCLIEFSSLDKLKIFLQDVNNK

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