NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1011196

Scaffold Ga0272425_1011196


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1011196 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7988
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004755Metagenome424Y
F028367Metagenome191Y
F055317Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_101119610F055317N/AMKVXKKRIYALNKETDHLVKMKQXDKSEIQQLKAQLQAFTAITVNVIIIAFLIVIYFEQSKYHKILDSSMFIDEKNSTXENXSFDIRKKLAINIDLFSNELYKLSYINFXLADDVVEVTQVKCNLNCDNFYLTVNELLKKLAQSFHDFDKKDNYRRKYINLIQESKKFSDFFNQFQRLYIYLKYQKNVLVIDLKNKINSCLQIFXTAQMKSLIKLSDIQNYLICLNNKHKAVQEIKNKLLKHDDSKIIISKATIAVQSSTLKSDXSKLCSAVLTSVKNANFLVEICFVCHKSDHSFRECLNXFIKINAVDENYNHFELNIESEFKSKN
Ga0272425_10111962F028367N/ALLRFXFKFRFKKLVISSKVIKEIEIIFLCKLDEILSKENYFEKSFLIDAHLISQKRSFSLCSLIDSDSVIYMIIHFNLVDKVCEKLKIQSISLTKKKLIRDYDEKISKKTITHKILFNLIIKSHKKLTVSMLIVDIDHHEVILSKLXMNKNEILLNVEIVSRSFNQRDSELICMYCFLKITITRH
Ga0272425_10111966F004755N/AMHCKLIKASILFNLINLVNLDTLVTFIXVDQLVQSDSLKEIHFYLIHLNNDQQVIQEIKNKIKRVNDVSKTIFHRATVITQQSVDHSKFNHSKSHDAILTNVKEEDILFESCFIYHKSDYSFKKCFNXSIKINAVNKEYDCFDFDLNFNSKN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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