NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1012769

Scaffold Ga0272425_1012769


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1012769 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7109
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032884Metagenome178Y
F059497Metagenome133Y
F089603Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_10127691F089603N/AYRELERIIKKAKNIVMYIDALQVRKKIAEVKTKTETTVIFTHELVRYSKATSVSDKIITTKAKLQAISDAIAICSEKALKNSEI
Ga0272425_10127693F032884GAGMTIRNERVEREECKETKKNESTMTRVERERLYVQTIDVIDQQEDIKQQL
Ga0272425_10127697F059497GAGMFIEDIDRKIIYNTQCKLNVINVFSVNETTQNLEDIKVKLLLKYQNFLDVFDQAQADKLSFHHSYDHKIKLTSFLLLFISSLSACSL
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