NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1013919

Scaffold Ga0272425_1013919


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1013919 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6589
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010658Metagenome300Y
F015284Metagenome255Y
F015552Metagenome253Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_10139192F015552AGGMTQLALNAKISNIIKITSFFANYSKKLNLFEEERTHLFAQSIIERIATLKKIYDNILKMQEKSIKY
Ga0272425_10139194F015284N/ALFNYNILKINKNESLLVNKYKLNATLQILQNNTKKILIKKEKLQISINKIDKYIKEHHDESLQRHLKVTKILQFLR
Ga0272425_10139195F010658N/AMIKAFVKREDYSTQKKSNAYNLVIVDENLLLNENEKVNKKTKLLSITI
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