NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272425_1023200

Scaffold Ga0272425_1023200


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1023200 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4294
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F005901Metagenome386Y
F032102Metagenome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_10232001F032102N/AMKIADLEKNNDQSIYKQILETNEIDENCTLLREAITRDEAQCKDIKLKNCRVQNEILYKDCQL
Ga0272425_10232004F000597N/AMSDDSFASESLITECILSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHVIYLNLTVQDHTIDTASMLIT
Ga0272425_10232005F005901N/AMNDKLQTNVNHFDNENICIVYVISRLEDDAAEHIFARRRHDALHSYISIDELFKHLKEIYNELNRNRKCRRKYNALRQTDKSFNVFYFNFMKLFSYLDYDDCILMNNLQNKINNRLQNALSVCSKNFTSLTRLRIFLQDVNNKQRVNYQLRSQLRTVIIKVTVVSDKRAATSLSAMTTLIIEYVKSTIFSTSESVRSSIVCYICKISDHLFKNCSQNKINILTSCAFTSRLHEIVISKNKENEKMSSFEDNEAKN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.