NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1033319

Scaffold Ga0272425_1033319


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1033319 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3222
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F017941Metagenome237Y
F018839Metagenome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_10333191F000597N/AMKDMLISSIMSNSNDFFALKFLTTECILSSNEINYSLKSLIDIKAADYSFIDKLIAQNVYDHLQIKFLTLIKAKSIQEFDDHYVKKLITYVIYLNLTV
Ga0272425_10333192F018839N/AMIITKVVTFNHLTSDLYAAVFIIAMFIELKDEAKLIELNDFTILLKKNDFSLSQVMTEEINLFSI
Ga0272425_10333194F017941N/AMKIADLKKNIDESIYNQILETNEIDENCTLLREAIARNET
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