Scaffold Ga0272427_1025985

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0272427_1025985

Scaffold Ga0272427_1025985

Overview

Basic Information
Taxon OID	3300031454 Open in IMG/M
Scaffold ID	Ga0272427_1025985 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Siegfried Peak sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3761
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.57	Long. (^o)	161.8	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030872	Metagenome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272427_10259857	F030872	AGGGGG	MARCAGIKRAGGRCTATVEPPQTYCWWHDPANARKRKRAASKGGKSKPNRELTDIKRRLSDLADAVLEGGQDRSNAAVAGQLLNTYIRAVAIELKVREQQDLIERLEELEVVLEHRKGDGRGHFG

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