NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272427_1096848

Scaffold Ga0272427_1096848


Overview

Basic Information
Taxon OID3300031454 Open in IMG/M
Scaffold IDGa0272427_1096848 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Siegfried Peak sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1098
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.57Long. (o)161.8Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023207Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0272427_10968482F023207GAGVCSIKVGGEVVFSQPWKEKTLHRDQTISEMVEEVLARQAKSLAERTGQPFEKVLGIVADTQAGQQLRELANGEHRHEKARDWQASVLWERAEERLMHLLASDVIVRFADERHYSWVEGNMEWLEGKEARTQYHALLEEELASLQG

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