NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272427_1167680

Scaffold Ga0272427_1167680


Overview

Basic Information
Taxon OID3300031454 Open in IMG/M
Scaffold IDGa0272427_1167680 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Siegfried Peak sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)658
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Trebouxiales → Trebouxiaceae → Trebouxia → unclassified Trebouxia → Trebouxia sp. A1-2(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.57Long. (o)161.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049324Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0272427_11676801F049324N/AITAHLYEEQISIGVIAVGQTCCEASLQSSTEQWGSYFALASAAVHCCCITAHLYEEQISIGVIAVGQTCCEASLQSSTEQWGSYFALASAAVHCCCITAHLYEEKTSIGEIAVGQTCCEASLQSSTVKWGNYFALTSAALHCCCITAHLYEEQISTGVTAVTQSML
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