NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272430_1000487

Scaffold Ga0272430_1000487


Overview

Basic Information
Taxon OID3300031460 Open in IMG/M
Scaffold IDGa0272430_1000487 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)86502
Total Scaffold Genes103 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)59 (57.28%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.6Long. (o)161.1Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018487Metagenome234Y
F051590Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0272430_100048753F051590GAGGMTDIEKVLTSQKKTNSRTILLNHYHKFLNVFDCTMTEKLSFLRKEDTDHQIELEEMNEKESKVL
Ga0272430_100048758F018487GAGMNSVLFTMSTLINKKSYVHTLYNTECLFYKIITFHFAKTHNLQCMKIRPHMITEFDEPSDSSVDKVAVIQIDIDEHQKSRTFFYIVSKLAFYNLILGLS
Ga0272430_100048760F051590GAGGMLNIEKALTSQKKTDLRTILSDHYHEFLNVFDRIMTEKLPSLREKGTDHQIKLKEVNEKESKVL
Ga0272430_100048769F051590GAGGMTDIEKVLTSQKKTNSRTILFDHYHKFLNVFNHTMTEKLSPLRKEDTDHQIELKEMNKKELKVL
Ga0272430_100048771F018487GAGMNSAFFTMSILVNKKSYAHILYNTECLFYEMITSCFVKNHNLQCMKIRSYMITRFDEPSNLSVNEVTVIQIDINRH
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Institute for Fundamental Biomedical Research
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