NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272430_1002311

Scaffold Ga0272430_1002311


Overview

Basic Information
Taxon OID3300031460 Open in IMG/M
Scaffold IDGa0272430_1002311 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37168
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (45.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.6Long. (o)161.1Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018487Metagenome234Y
F033649Metagenome176Y
F061398Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0272430_100231119F018487GAGMNSAFFIMSIIVNKKSYAHILYNTECLFYKIITFHFARNYNLQCIKIKPCTITKFNESSNSVVNEVTVIQIHINSHQK
Ga0272430_100231120F061398N/AMKQNKIILNADRVFLMIEFTETIIQNRKASVENEFNHVMMSAMFFTNLIQKKKEKQKKIEVFSVSMINIEKALTSQKKTDLRTILSDDYHKFLNVFNHMMTEKLLPLREEDTDHQIKLEEMNKKELKVL
Ga0272430_100231126F033649AGCAGMSANQHSKXYLSDSLRFEEKRVKFRPXLQQIVAKLNVNMSDNNVSVQFXYLHSXLEGLALSQVTSXIVACIKLNKVLNHMIIEELIDQLQHTYNDSESKKRVTCTLKALKQKEKSFTKHLITFKQTLLKAEGLKXDDAVKKTFLNNSLNAILTQALIVISISVLYDEYIILLQXVSHNLNLIQKAATQECCMTTTIITQQSYTDNINXELIEHIIVTATETEERCRAQXVSEKKVVKCCTKXLCMHCRDNDHFIKNCKLLSAVXPHIINVAAVETVKKMTEEEKNSEKE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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