NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272430_1002612

Scaffold Ga0272430_1002612


Overview

Basic Information
Taxon OID3300031460 Open in IMG/M
Scaffold IDGa0272430_1002612 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34084
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (81.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.6Long. (o)161.1Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034417Metagenome174Y
F042663Metagenome157Y
F058564Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0272430_100261222F034417AGGAGGMTWAIVKPRDAWVRQAKEAWAALEPQAPQGAHLRDLAAIDHHNFALLIEALCALTPGQVSQELQDLAGLRPVGEVLGMPDWGNARIDAGDAGD
Ga0272430_100261223F058564AGGAGGMTLIGYTLHGHPLCLLCVDGDYDRAADGLAHAHDGQGCAADVAPIHAGDPDDGAPCAGCGQPLAAPPEAGVVWTCPYCGNADLRVLYDERRACRVTTLNDTGDPADAEPWPSYAGDEFVDIDPGSFAFHCDACNIHNITPRKGGAINDLGHRQAA
Ga0272430_100261225F042663AGGAMTPQAIPAPHVAASLPSIPPRSIVTLDDGDVSVTVTFRPCSPIGSTEVVTSLDGLDDTALLHLVDSAISRLSAYHAAYQHAMTEDAAPAPISAPLPLPVPWYAW
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