NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272430_1003199

Scaffold Ga0272430_1003199


Overview

Basic Information
Taxon OID3300031460 Open in IMG/M
Scaffold IDGa0272430_1003199 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29214
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (14.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.6Long. (o)161.1Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F021026Metagenome220Y
F038009Metagenome166Y
F080690Metagenome114Y
F102179Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272430_100319912F102179N/AMSVHSISENMSTCSAMHIRSMLLKIMILAVQETHLDKVHFLKDKISQFESTTSRSTDIETLIHRDHNVAEKQLNSVAETVDCKQLISCAIVKVLTIHETIYNFSSKFIVELIKILQCQRL
Ga0272430_10031995F080690N/ALHNARASKSSVIISSSFIVLNSSVYIELNSQFLVMIAQIVAQILNNQSFLVVHLSANSVAVFIASRFEKLLDISEYEKNKDRLNAXKQSLIQRMNVNDDHYLSHRVKIVYLESRLIIDKKTHNLMSQYRVNDLCIIFIFADXXHKLHHCCDNSFKTEDAHLYLRETLKQDMNSFVDYYNLFYQKKECFLMKDFSLIDCLKRNVNYFTQVIIFFXRNLDETRSFIFHQXV
Ga0272430_10031996F001951GAGMMTMTKFRFIDSSKDEKERDEDTVKTTVTEVMIFELKELLIDAEMFLTLMNETMTKTKRD
Ga0272430_10031997F021026N/AMIIFCILRQAQSRVLTFALIDSEVFAYVFMNKFFAQQHYLFLHQLTHSRRLQEFDDQVALINDIIHVIEITMILDEHIERLFFYVIELSQYLIIMSLSXLHHHVIDVNFEHNILILSFFFCLNHCCQTLVKIYDLNQQEENFSLEVNKVASLQSRSQFAHKKQLSSXITHKKQFRLQIAHKKQFSTQFACKKQFSFSFAXKK
Ga0272430_10031998F038009N/ALIELICSRNNRSSKEERILTLDFXXVFFLNDLKNTIRSFLFQTRDKIERDLFLVNELSINXLLMSEREIILLLVSRXKTELLFSNEXRTRLLLASELKTELLLSSEXKTRLLLASELKTELLLSSEXETKLLLASELKTELLLSSEXETKLLLASELSAELLLVSNL
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