NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272430_1003794

Scaffold Ga0272430_1003794


Overview

Basic Information
Taxon OID3300031460 Open in IMG/M
Scaffold IDGa0272430_1003794 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26065
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (56.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.6Long. (o)161.1Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018487Metagenome234Y
F061398Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0272430_100379425F018487GAGMNSALFTMSTLINKKSYAHTLYDTGCLFYEMITSHFAKNYNLQHIKIKPCTITEFDEPSNSVVNEVTVVQIDINSHQKSRTYFYIVFKLVSYDLILGLL
Ga0272430_100379426F061398AGGMKQNEVILNADEAFLTIEFTETIIQNREAFAESEFNHVMMSAMFFINLVQKKEEKQKKIEVFLISITDIEKVLISQKKTDLRTILSDHYHEFLDVFNHTMTEKLSLLREENTDHQIELEEMNQKELKVL
Ga0272430_100379429F018487GAGMNSASFTMSTLVNKKSYVHTLYDTECLFYEMITSCFARTHNLQCMKIRPHTITRFEKPSDSSVNEVVIVQIDIDRHQKSRAFFYIVFKLASYNLILGLS
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