NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272430_1003829

Scaffold Ga0272430_1003829


Overview

Basic Information
Taxon OID3300031460 Open in IMG/M
Scaffold IDGa0272430_1003829 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25887
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (23.26%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.6Long. (o)161.1Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F009580Metagenome315Y
F048018Metagenome148Y
F074204Metagenome119Y
F087980Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272430_100382918F087980N/AMIENSVEIFRAMQELQNQVQQHDIIISFSFIVFNSSIYIKLNSQFLVMITQIITQILNNQSFFIIHFSANSVAVFIASRFKKLLNISEYERNKD
Ga0272430_100382919F001951N/AMTKFKFIDSLRNKREKDEDTVKTTVTEMMIFELKELLVNAKMFLTLMNETMMKMKXD
Ga0272430_100382920F009580AGCAGMIEVRMKRLKLVDKMIYIQISERDLTQKLNYSCKQQNFFIYTDDVIVVNVHDMQSEELFIXAFFNNFAXMLQLAVVAHLSFVADFLDFRNDQNLILNDDNDKV
Ga0272430_100382921F074204N/AMIVFCILRQAQSKVLVLTLINSEVSAYVFMNKFFTQQHYFFLHQLIHSCRLXEFDDQVTLIDDIIHVIEITMILNKHLKRLFFYVIELSQYLIIMSLSXLHYHVIDVNFEHNILIFFLLL
Ga0272430_100382924F048018GAGMIXRHSLFELSTYFLSXKYKXFSCSLHSTKEILLXCHASLXSASIIXAANLSLISTCFYNVXVKMLAESSSRFRMSXFSXNLIFLTLNSLISKFMKIKIYKDAEIIKNRCNXTESKVMICDXSFMTLMLKMLKMRFSTILKSKTXIFRIVXCXYXCQELNVFFSLKKFSEQCVKAFNLSSILLKX
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