NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272430_1005004

Scaffold Ga0272430_1005004


Overview

Basic Information
Taxon OID3300031460 Open in IMG/M
Scaffold IDGa0272430_1005004 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20809
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.6Long. (o)161.1Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018487Metagenome234Y
F079401Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0272430_100500412F018487N/AMSTLVNKKSYAHILYNTECLFYEMITSHFAKNYNLQCIKIKPHTITEFNESSDSVVNEMTVV
Ga0272430_100500413F079401AGCAGMMQDHTADRNLQFLMKWLLSSQCMYSYFVQCSVTFFSDTHCALCLSLISVTATMMCLMISQFMLSVXDCYVMMIVVVQHSXVTVFXIEFKLXLICCSKVMYSSYNTEIEMTIRACVSVVSRLLLRNVFLTASSHFKSSAFSSIHSKVIECLANDFSFCFKAFKIXVALFFNSKSLYMCQSXLISFSMIVQFRTSFNLI
Ga0272430_100500417F079401N/AMHSHFVXHSVTFFSDTHCALHFFSVFAAVTLTCSVGSQFMKFMXNCXVMIVIVIQHSXVTAFXIDFKLXLTCCSKVMYSSYNTEIEVTIRAYMSVISRLLLRNVFLTASSHFKPSAFNSIHLKMIRCLANDFSFCFKAFKIXVTFFFDSESLYTCXSXLISFLMIIXFKTLFDLIQVTI
Ga0272430_100500418F018487AGAAGMNSVPFTISMLINKKSYAHTLYNTGCLFYEIIIFCFTKNHNLQCIKIRPHMITEFDKPSDSSVNKVAVVQIDIDEH
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