NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272430_1006950

Scaffold Ga0272430_1006950


Overview

Basic Information
Taxon OID3300031460 Open in IMG/M
Scaffold IDGa0272430_1006950 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15561
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (47.37%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.6Long. (o)161.1Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018487Metagenome234Y
F061398Metagenome131Y
F079401Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0272430_100695010F079401N/AMLMMXDHTADRSLQFLIKXSLFSQCMHSCFIXHFVTFFSDTHCVLHLSLIFIAVTMMCSVSSQFMLFMXDCCVMIIVVIXHSXVTAFXIEFKLXLTCCSKIMYSSYDTEIEITIKAYMSVIFRLLLRNVFLTASSHFKSAAFNSVCLKVIRCLANDFSFCFKAFKIQVALFFDSKSLYTCXSXLISFSMIVXFKTLFDLIQVTIQGVIXLKVNSSNXLCKY
Ga0272430_100695011F018487AGAAGMNSALFTISTLINKKSYTHTLYNTECLFYEIITSHFAKNHNLQRMKIRSCMITEFDESSNSSVYEVAVV
Ga0272430_100695012F061398N/AMKQNKIILNADRVFFTVEFTETIVQNRKASAKSEFNHVMMSAMFFTNLVQKKEEKQKEIEVFSVSMIDIEKVLTSQKKTDLRTILSDHYYEFLNVFDCTMTEKSPSLKEEDTDHXIELEEIDEKESKVLXDSLYNMMREKLLVLHKTLTELLNKQFI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.