NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272430_1012145

Scaffold Ga0272430_1012145


Overview

Basic Information
Taxon OID3300031460 Open in IMG/M
Scaffold IDGa0272430_1012145 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9555
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (26.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.6Long. (o)161.1Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018487Metagenome234Y
F033649Metagenome176Y
F079401Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0272430_101214511F033649N/AVYDNSKSRKKATCTLKALKQKEKSFTKHVIIFEQTLLKAEDLKXDDAVKKTFLSNSLNVMLTQALITTSISVSYNEYIILLQQVSHNLKSIQKAVTQECHIMITIITQQFYTDFMNXESTEHVSITTAKTEKKCRAQXVSEKKVTEHCTKQLCMQCEESEHFVKECKLLSVVQS
Ga0272430_10121454F079401AGAAGMKXLLSLQCMHSCFIQHSVTFFSDTHCALCLSSVSVAVTMMCLMSSQFMLSVXDCCVMIIVVVQHSXITVFXIEFKLXLTHCSKIMYSSYDTEIEITIRAHMSVTSRLLLRNVFLTASSHFKSSAFSSVHLKMIRCLVNGFSFCFKAF
Ga0272430_10121455F018487GAGMNSVFFIMSTLINKKSYAHTLYNTECLFYEIITSHFARNHNLQCIKIKPHTITEFDESSNSVVNEMTVI
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