NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272430_1018663

Scaffold Ga0272430_1018663


Overview

Basic Information
Taxon OID3300031460 Open in IMG/M
Scaffold IDGa0272430_1018663 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6618
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (15.38%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.6Long. (o)161.1Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F008735Metagenome328Y
F009580Metagenome315Y
F086377Metagenome110Y
F089602Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0272430_101866312F086377N/AMIQRFXDQRQRISILNCDNVQILIVHAEAKFFFEFLDEENRNDRLKVIDLNEIFAQILIQITTKF
Ga0272430_10186634F008735N/AMKEIMIVVHVHALYQTLLSCIQSIFIFLILRYVEKLLESRSDEDNDRICKEMNDNERLIVQDLCDDLSYHCKRLRIQFYIDXRTENNEQRXSDIIILSNLILKLLHYAKDLDXIFDHTLSELFNSTLIINREIVRXLYLSERVTRXDFNVRKRCRKCKSFVMSKTELN
Ga0272430_10186635F089602N/AMKDEXSSFIEISSEENDDLSEIIDIALQTVNQXEIFHQRMFFLLIKEIVIVDKAIHVLLQNFSKI
Ga0272430_10186636F001951N/AMTKFKFIDSSRNEREKDEDTVKTTVTEMMIFEFKELLIDAEMLLTLMNEMMTKTK
Ga0272430_10186637F009580AGTAGMICIQIFERNLAQKLNFFCRQRDFFIYIDDIIVVDVHDMQSEELLIXAFFNDFAXMLQLAIVAQLSLVADFLDLRNDQNLILNDDNDKV
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