NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272430_1024426

Scaffold Ga0272430_1024426


Overview

Basic Information
Taxon OID3300031460 Open in IMG/M
Scaffold IDGa0272430_1024426 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5231
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.6Long. (o)161.1Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023763Metagenome208Y
F071806Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0272430_10244262F071806N/AMKLQSQIITLNSVQLHLFSVTSALSQILIFMNLEIEEFDVEDIKFQLNQDILNLDEDSADTLN
Ga0272430_10244263F023763N/AMSFQNCLMLILMSRIECISLFKKIFXATCQSIQLIIDLVETISDAIVESRQKLTSTSLMTIQLLNXHEILKIFVICDHLNRIDRVFELXSSFLESANNDHEFFIVDLVVTLDXVMLLRKVSDXMKNLVLIILRENVFEHIVVTNXELNEIRMKF
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