NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272430_1026813

Scaffold Ga0272430_1026813


Overview

Basic Information
Taxon OID3300031460 Open in IMG/M
Scaffold IDGa0272430_1026813 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4826
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.6Long. (o)161.1Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008735Metagenome328Y
F009580Metagenome315Y
F021026Metagenome220Y
F087979Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272430_10268133F021026N/AMIVFCILHQAQSKVLTLVLNDSEVFAYVFMNKFFTQQHHLFLHQLTHSCRLREFDDQVALIDDITHVVEITMILNEHIERLFFYITELSQYFIIMNLSXLCHHVIDVNFEHNILILSFFFCLNHCYQTFIKIYDFNQQEENFSLEVNKVAFLQSRSQFTHKKQLSSRIAHKK
Ga0272430_10268134F009580AGCAGMIEVRMRRLKLVNKMICIQISERDLAQKLNFSRRQRDFFIYIDDITVVDIHDTQSEKLLIXAFFSNFAXMLQLAVVAQLSLVADFLDLRNDQNLILNDDNDKT
Ga0272430_10268136F008735N/AMREIMIVVHVHALYQTLLSCIQSIFVLLILRYVEKLLKSRSNDDSDKVCREMNDEKRLIVQDLCNDLSYHCKRLRIQLYINXRTENDEXERNDNIMLSNLILKLLHYAKDLDXIFDHTLSELFNSTLIVDQEIVKQLHLSERITRXYFNVXKRCRKCKSFVMSETELD
Ga0272430_10268137F087979N/AMKEKNENSTFIYMNRAESRLDSSSIDLRLQKFAHMTEMIETELLRLD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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