NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272430_1032664

Scaffold Ga0272430_1032664


Overview

Basic Information
Taxon OID3300031460 Open in IMG/M
Scaffold IDGa0272430_1032664 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4055
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.6Long. (o)161.1Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023763Metagenome208Y
F061399Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0272430_10326644F023763GAGMSFQNCLILILMSRIECISLFKEIFXVTCQSIQLIIDFVKIISDVIVESRQKLTSTSLMMTQLLSXHEILKIFVIRDHLNRIDKVFKLXSSFLESANNDYEFFIVDLVVTLNXVMLLXKVSDXMKNLILIILRENIFKHIVQSINFYHNLVIXIIMTKNNLESENFLKSVECNLTFLKSNKEYIFSDETSERDSYSTIVINESFIKVHEI
Ga0272430_10326645F061399N/ALCFLSVLKHHXCDVFMNYVNSLSLSIFISITYKYVLIFIDHFIKMKHLVLITSMKVEEAINCFYAHVXKHHNLLKFFMSDRDTQFIFNVXKHMCKMLKIDAKLLIMYHSEINDQIKKVNVVMKYYFXIFVNYMQNDXVKXLSEVEFIVNNASSLITLASLFLINLSQNSCLDFEFSESLFKNFMFQAXDKLINVEEFIKKMKKLTEHLRDEMLIAQIIYEFNVNLFHHSCFKYFVEDEVRLNACNLSIVHLAVKLNDHNVNFFKIKHVFKNNSLIIELNLSAFMKIHSIFHVIL
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