NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272430_1032677

Scaffold Ga0272430_1032677


Overview

Basic Information
Taxon OID3300031460 Open in IMG/M
Scaffold IDGa0272430_1032677 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4054
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.6Long. (o)161.1Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021896Metagenome216Y
F023763Metagenome208Y
F048018Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0272430_10326774F021896N/AMMKNNLESEDFFKNVECNLTFLKSDKEYIFSDEMSKQDNYSTIVINEYFIEVREI
Ga0272430_10326775F023763N/AMSFQNCLMLILMLRIECIFLFKKIFXATCQSIQLIINLVKTISDVIVESRQKLTSISLMMIQLLNXHEILKIFVIHDHLDKIDKVFELXSSFLESANNDHEFFIVDLVVILNGAMLFXKISDXMKNLVLIILKKNVFKHIVQSINFYHNFVI
Ga0272430_10326776F048018N/AMYFLSXKYKXFSCFSYSIREILLXYHASLQSASIIXVANLSLISTYFHNVXVRMSAKSSSRFKVFXFNXNLTFSTSNSSNSKFMKAKIYKNAEIIENRCNXIESKMMICIXSFMTLMLKTSRTRFSTILKFKTXVFRIVXCXYXC
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