NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272430_1062861

Scaffold Ga0272430_1062861


Overview

Basic Information
Taxon OID3300031460 Open in IMG/M
Scaffold IDGa0272430_1062861 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2185
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.6Long. (o)161.1Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066295Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0272430_10628612F066295N/ANDKLFVKMIIFFMFYEIXKTQSLILNEETDXLYKSNKQQEDEIKELKIKLQAKENTSSDFIYSERSRSQKIFDSSLFTDEKNSIXKNXYGKIQNKLKINVDLFSNEXVQLSYIHSRLFDDAAEITQARCKRDCVNLYKIIDNLLKKLAQLFNDLNKKVNFHRKYYNLIQRSKKFSEFYTQFQXLFFYLNYHEKQLIVDLKDKINLHLXFIXVN
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