Scaffold Ga0272448_1010270

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0272448_1010270

Scaffold Ga0272448_1010270

Overview

Basic Information
Taxon OID	3300031463 Open in IMG/M
Scaffold ID	Ga0272448_1010270 Open in IMG/M
Source Dataset Name	Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - YNP-CB-019-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9433
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (93.75%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5676	Long. (^o)	-110.8075	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006925	Metagenome	362	Y
F008219	Metagenome	337	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272448_101027014	F008219	AGG	MPKYLVEIILVVKAKNPQEARKIADYIIDLPIPDKNIENAIETMRYEEIVQIKNPRA
Ga0272448_10102702	F006925	GAGG	MAVEVSVLENFGREAELRKKWLQMWEKLGVRILKLPKWMQEIVLEDVNTAIRNRLAIMEMIQNAKRNHRA

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