NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1000111

Scaffold Ga0272432_1000111


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1000111 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)171779
Total Scaffold Genes169 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (21.30%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038484Metagenome165Y
F044227Metagenome154Y
F048018Metagenome148Y
F074202Metagenome119Y
F087979Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_100011110F044227N/AMQLRMKSSDDEACTYALLELIASAIKNVTRCXLLELLNNHRHHEEYQSSNKDDDENEALEAI
Ga0272432_100011113F087979N/AMKEKNENSTFIYMNQAELKLDSSFIDLRLQKFMHMTEMIETELLKLN
Ga0272432_1000111160F074202N/AMYEXSLFTCQKEIYMYVKKCLQLLYRXLKPQSLFLTKLLEKCVSNFMKTVDCKMNCKMNCKMNCKTIYVSFLLMSSCLLCSDNAFNLALLLNDDFFLKLIILKLRLRVTAELSFKEEVILRYSFFNAKDDDLDSSFDLETATNFIKFLXFIIFCNHXSFFFNLFLSIKCDVTRSKXADAENQAFESEVVIDLAVLDNVNNEDSLKFENLDCEDDMKRSTSIVSLFFSSDIVN
Ga0272432_100011117F048018GAGMIXRCSLFELSMYFLSXKYRXFSCSSHSIKEILLXCYVSLQSTLIIXTANLSLISTYFHNVXVRVSAESLSRFRVSXSSXDLTSSILNSLISRFIRTKICKNAEIIKNKCNXIEFKVMICDXSFMILMLKMSRVRFSTILKSKTXVFRIVXCXYXCQKLNVFLFLKRSSERRVKAFNLSLILSKQ
Ga0272432_10001119F038484N/AMCIARMLSAFXKSLHISIILLLRCNLCAEIALTSAMHSLYISHRXFHXSLXYCVIVMLLLIEIIVKKKVHHLHLNCIFASSXMKTFRSIIFLMMSEREMIQLTFVKXTHISLHACLISCVQLLTQLCNVILFCNMFKXTCSELMYVFVSRVSMFTFLNASATXCKVXFXSVSSLHSLLNSLSFLSCXCQIDALNAISDLTTAEYTCLAFVKIALHVKISRXLSISILVTXFIFICQRCMSHCSFMFSCTSKTRTSDFDLITEFSICMLVIMLNLFDFLVKCVSSYFSDANVASXMQAYFAQTSSAICKEXQRQILTLLMINILNIRLISCFRFASLLIDAYS
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