NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1000172

Scaffold Ga0272432_1000172


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1000172 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)133210
Total Scaffold Genes143 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (11.19%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017767Metagenome238Y
F028367Metagenome191Y
F038484Metagenome165Y
F096306Metagenome104Y
F104134Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_1000172125F096306N/ALNTLSSLCDIRAMFAMYDNRAVNSLIVDDNSNEERLCRDNSELYTSMILFNIATLIATNVKIVFVESNDK
Ga0272432_100017216F028367N/ALCKLDEILLKENYFEKSFLIDAHLISQNQSFSLRSLIDSYSVVYMIIHSNLVNKVCEKLRIQSISLAKEKLIRDYDEKISKKIITHKILHNLIIKSHKKLTVSMLITDINHYEVILSKLXMNKNEILLNMQNDVIVFSNQLNTSISIFSILLNSKHLS
Ga0272432_100017219F038484N/AMRSILICIARVLSAFXRSSRIFIILLLRCNLCVEITLMSATRSLYFSHCXFHXSLXYCIIAMLSLVEIIVKKRMHHLHLNCIFASFXMKTFRSTIFLMMSEREITRLTLVKRAHISSHACLIFYVRSLIQLCSMILFCSMFKXTCNELVYVSVFKVSMLTLLNTSATXCRVXFXSVSSLHSLSDSSSFLSRXCQTDTLNAISDLTTAEYTYLAFVKIAFHVKTLKXLSVSILMTXFIFICXRCTFHRSFMFSYISRTHTSDFNLITEFFICMLIIMLNLFDFLVKCMSLYFSDANVVSXMQAHFAQTLYALLSVVQISSVNLL
Ga0272432_100017224F104134N/AMSLLLSLRSDMIRFLXSVNTSAILCKICSIDFFCIFSISLLFIILIMTSHLLQSNDESSLKHCFFVTISSLVTFAHDVIFVERCMLLYVCNCLLSSXTDVFSFCTFFAMNAFXFVXCFSSESSRKHQISFNAISFHEXSLLFSFSNVDIFITKSIILATFSSLLRECFDLTSLFSCNELTSLAIVLKSALLQFMQFIVVQSFSRFTLSCL
Ga0272432_100017229F017767N/AMSTSDDSFASESLTIECVLSSNEINYSLKSLIDIEAADYSFIDEVIAQIVCDQL
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