Scaffold Ga0272432

Basic Information
Taxon OID	3300031470 Open in IMG/M
Scaffold ID	Ga0272432_1000617 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031470 Open in IMG/M

Scaffold ID

Ga0272432_1000617 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	58749
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (25.42%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

58749

Total Scaffold Genes

59 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (25.42%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.9	Long. (^o)	160.7	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.9

Long. (^o)

160.7

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F003820	Metagenome	466	Y
F017767	Metagenome	238	Y
F028368	Metagenome	191	Y
F066295	Metagenome	126	Y
F081945	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272432_100061732	F017767	N/A	MKDVLISSMMSMLNEFFVSESLIIECVLSSNEIDYLLKSLIDIEAADYSFIDKVIT
Ga0272432_100061738	F003820	N/A	MKLFSYLNYDDCTLMNDLQNKINNCLQNALSICSENFTSLLRLKKFLQDVNNKQRVNYQLRSERHTVIIKVTVVSDKCTTLLLMMTSIINYVKSTIFSIFKSARSSIICYICKTSNHLFKNCSQNKIDISTSXAFTSHLHEIVISKDKKNEKMFSFKNSKTKN
Ga0272432_100061739	F000597	N/A	MMSMSDDSFASESLIIKYVLSSNEINYSLKSLIDIEAAEYSFINEVIAQIVYDQLQIKSLTLIKAKSIREFNDYYAKKLITYVIYLNLTVQDHMIDIASMLIIQLNQHQMILEKTXMNKINLVIDMQIDSL
Ga0272432_100061749	F028368	GAG	LCKLDKILLKENYFEKSFLIDAHLISQNQSFSLCSLINSDSVIYMIIHSNLVNKVCEKLKIQSISLTKEKLIRDYDEKISKKVITHKILFNLIIKSHKELTVSMLIADINHYEVILNKLXMNKNKILLNMQNDIIVFSNQLNTSILIFSISLNSKHSNXSRSTSSSSITQTKIFMIFKQLVQEESFSIQSINATLFKTLLNHLKKNKIEVFALFMININRKITYNTQCDLNALNISSINEMIQNLKDIKAKLSSKYHKFLDVFDRAQCQNHV
Ga0272432_100061750	F066295	AGAAG	LKTKLQAKEITSSDFIYFERSRSQKISDSSLFTDEKNFTXKNXYRKIQNKLEINVDLFSNERVKLSYIHSRLFDDAAEITQARHEHDCIHLYKIVEDLLKELTQLFNDSNKKVNFRRKFYNLIQEFKKFNEFYT
Ga0272432_100061751	F081945	N/A	MSSHSFIEEHFEEFRNRFSQISDADSLKXXTKSLSAASFIHEDEESFAEMIISLMFYEIXKTXSLVLDEETD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272432_1000617

Overview

Ecosystem & Geography

Associated Families

Sequences