Scaffold Ga0272432

Basic Information
Taxon OID	3300031470 Open in IMG/M
Scaffold ID	Ga0272432_1000624 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031470 Open in IMG/M

Scaffold ID

Ga0272432_1000624 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	58295
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (10.71%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

58295

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (10.71%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.9	Long. (^o)	160.7	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.9

Long. (^o)

160.7

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F005901	Metagenome	386	Y
F008115	Metagenome	338	Y
F008735	Metagenome	328	Y
F038009	Metagenome	166	Y
F038484	Metagenome	165	Y
F057012	Metagenome	136	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272432_100062411	F008735	N/A	VNLLIYDESXLDINDLDSMKEIMIIVHIHALYQTLLSCIQLIFVLLIFRYVKKLLESRSNEDSDRICKRVNDEKRLIVQNLCNNLSYHCKRLRIQFYINXRTENDEXERNDNIMLSNLILKLLHYAKDLNXIFDHTLSKLFNSTLIINQEIVRXLYLSERITRXDFNVXKRCRKCRSFIMSKTELD
Ga0272432_100062414	F038009	GAG	MIKALSFQLNYVKLYKKSIELICLKNNRSSKEERILTLDFXXVFFLNDLKNTTRSFLFQMKDKIEXSLFLVNELNISXLLISEQRVILLLVSRXETELILASELRTELLFVSELKTELLLSNEXKTKLLLASELKTELLLLNE
Ga0272432_100062427	F057012	N/A	VTESDILIFCFINMSDDLFDFKSFTVDIILSSLEKIFRSFALINTEVIDMTFIDESLMSELCERFDIQSISLSKSKSIQSYDEISDRKSITHALYTSIMIQEHKNEMMSLLITCLDQHKIIIENLXLKRNQILIDSANDRLISSLKIQTSKSIVSKASSQSAFHRFESSEICKMKQKNLNSMIMLTIILKRLTNLKLVNQFIESVRFIESVLIQKQST
Ga0272432_10006245	F008115	N/A	MNFITELSLSEDYNVICIIICYLIKEHHYVFCHXEDDDISIEEMIXIMLXNVYRLHDLLSSIVSNRNSQFISTMXKSLCKXLRITASLFTVYHSEIDDQLKXVNQDVKRELRIYCNYMQNDXVKXISMMKFSDNFNIFSITSMIFFYFNKEFHSXMSFDSDTTDYETTCERLKARKADDIVIQMKKLLNFDHQQLKKTKLIIEVQINKHKXDIIYEVNDXVXLSFRNVKTTRLCKDLKDKQLNLYQITVKMSIFYHFHLSVSMKHLHSMFSSKLLQSYSEDFLSEQHSESLRSITIEDDEHXKIDDILNFRRYRDXIQYKVKXTDLDRNDEXYYVDKEKFDDSEEVLNEFHKLYSNKSR
Ga0272432_100062450	F000597	N/A	MSMSNDFFASESLTTECVLSSNEISYLLKLLIDTEAADYSFIDEVIAQIVCDQLQIKSLTLIKAKSIREFDNHYAKKLITHVIYSNLMIQDHTVNIASMLITQLEQHQMILGKTXMNKTDLVIDMQIDSL
Ga0272432_100062451	F005901	N/A	MMSRLEDDAAKHIFAXCCFDSSNSFTLIYELFDHLKEIYDELNKNQKSRREYNALKQADKSFNIFYFNFMKLFSYLDYDDRILMNDFQNKINNRLQNVLSVCSENFTSLSRIKKFLQDVNNKQRVNYQLRSERCTVIVKVIVVPDKCATSLSVMTSIINYVRSTIFSISESARSSIICYICKISNHLFKNCSQNKIDISTSXAFTLRLHEIVIFENKENKKMSSFKNSEAKN
Ga0272432_10006248	F038484	N/A	MRLILMCITRMLSAFXKSSRIFIILLLRCDLCAEILLTSATRSLYFSHRXFHXSLXYCIIAMLLLIEIVVKKRMHHLHLNCIFASSXMKTFRSIIFLITSEREIMQLTFVKRARISLYAYLISYVQLLTQLCNVILFCNIFRXTCSELMYVSVFKVLMLTLLNTSATXCKVXFXNVSSLHSLLNSSSFLSRXCQIDALNAISDLTTAEYTCLTFVKITSHVKTSRXLSVSILVTXFIFIYQRCAFHCSFMFSCIFKTHTFDFNLIIEFSIYMLVIMLNLFDFLVKCVSSYLSDANVMLXMXTHFTQMSCALLNILQISSVNLS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272432_1000624

Overview

Ecosystem & Geography

Associated Families

Sequences