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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031470 Open in IMG/M |
| Scaffold ID | Ga0272432_1000677 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 55585 |
| Total Scaffold Genes | 59 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (16.95%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 160.7 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F021896 | Metagenome | 216 | Y |
| F035571 | Metagenome | 171 | Y |
| F038484 | Metagenome | 165 | Y |
| F048018 | Metagenome | 148 | Y |
| F075493 | Metagenome | 118 | Y |
| F094624 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272432_100067711 | F094624 | N/A | LINLSQNLCLDFKSSESLFKNFTFQAXNKLINVKEFIKKMKKLTEHLCDEMLIAQIIYKFNVNFSCHSCFKYFVEDEVXLNACNLNIAHFVIKLNDCNVNLCKIKHVFKNNSLIIELNLSAFMKIHSIFHVILSNHIISDFLSNQHQKS |
| Ga0272432_100067713 | F048018 | GAG | MIRRYSLFELSIYFLSXKYKXFSCSLHLTRKILLXCYASLQSISIIXAVNLSLIXTYFHNVXVRMSAESLSRFRISXFNXDLTSLTLNSSIFKFIKVKICKNAEIIKNRCNXIESKVMICDXSFMTLMLKTSKVRFSTILKFKT |
| Ga0272432_100067715 | F075493 | N/A | MXSVXAVHEYMLRRLITSFAVTLQAIHVXNVSRVQISIQIYAFDSDVHCKSAFCFLKIITHLYHLIAQMQSLCXDYIDVCDAFSVLFSSLISLIFVILRYCDVIACXNHCEEEDASFASQLYLRIFLNENIQKYYFLDDE |
| Ga0272432_100067716 | F035571 | GAG | MTXLTLVKRTCISLHACLISCVQSLIQLCSIILFCSMFRXTCNELMYISVFRVSMFTLLNTSATXCRVXFXSVSNLHSLLSSSSFLSRXCQTDALNASSDLTTVEYTCLTFVKIVSHVKTLRXLSISILVTXFIFICRKCASHRSFMFSCIFRTHTSDFDLIIKLSICMLIIMLNLFDFLVKCMSLYFSDANIVSXVQAYFAQTLCALLNVLQISSVNLS |
| Ga0272432_100067734 | F038484 | N/A | MLSLVEIIVKKKVHHLCLNCIFASSXMKTFRSTIFLMMSEXERTRLTLVKXAHINLHACLISCVXSLIQLCNVILFCNMFRXTCSKLMYVSVFKVLMFTLLNASATXCRVXFXSISSLHFLLDNSSFLSRXCQTNALNAISDLTTAEYNCLAFVKIASHVKTLRXLSVSILVTXFISICXKCASHCSFVFSCIFRIHMSDFDLITELSIYMLIIMSNLFNFLLKCMNSYFSDANVASXVQAHFAQTSCALLNILQISSVNLS |
| Ga0272432_10006778 | F021896 | N/A | VKIFFKSVECNLTFLKSDKEYIFSDEMSEQDNYSTIVINEYSIKVREI |
| Ga0272432_10006779 | F048018 | GAG | MIQRRSLFKLSTYFLSXKYRXFSCSLHLIREILLXCYASLQSISIIXAVNLSLIXTYFHNVXVRISTESFSRFKVSXFSXDLMFSILNSLISKFIKVKICKNAEIIEDKCNXTEFKVMICNXSFMTLMSKTLKVRFLIILKFKTXVFRIV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |