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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031470 Open in IMG/M |
| Scaffold ID | Ga0272432_1000764 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 51132 |
| Total Scaffold Genes | 55 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (21.82%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 160.7 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010214 | Metagenome | 306 | Y |
| F021216 | Metagenome | 219 | Y |
| F035571 | Metagenome | 171 | Y |
| F038008 | Metagenome | 166 | Y |
| F038009 | Metagenome | 166 | Y |
| F041516 | Metagenome | 159 | Y |
| F075493 | Metagenome | 118 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272432_100076418 | F038009 | AGCAG | LNFQLNYVKLYKRLIELICLKDNRSSKEKRISTLDFXXVFFLNDLKNMIKSFLFQTRDKTEXSLFLVNKLNISXLLISKRRVILLFVSKRETELLLVSELKTELLLVSELKTELLLSSKXETRLLLASELKTKLLLSSKXETRLLLASELKTKLLLSSEXETRLLLASELSAELLLVNNL |
| Ga0272432_100076428 | F021216 | N/A | MKSRMKSNAMRREHYELEKAFKNHERNDDDHLNDTFNEYTESISSCDVIKESNERERK |
| Ga0272432_100076437 | F010214 | N/A | MKVSVLLNYNTLSLLYSSLMIFYTMMSXFDSXFKDERRFLCIHDVHDCNICKAVFSYSMIVIHXVEKYVMKERYTXXEDKVXLYXVTLFFFXFNLCHVNVEXIVSINVQLQSFDVXLXSMKENVFXLFSXTLNFSCE |
| Ga0272432_100076443 | F035571 | GAG | MXITFVKQTHISLHACLISCVQSLTXLCSMILFYNMFKXTCNELVYVSVSKVSMLTLLNASATXCRVXFXSVSSLHSLLNSSSFLSRXCQTDASNAISDLTTAEYTCFAFVKIAFYVKTSRXLSVNIFVTXFISIYXRCASFCSFMFSCIFRTCMSDFNLITELFIYMLIIMLNFFDFLVKCINSYFSDANVASXVXAHFAQTSCALLSVLQISSVNLL |
| Ga0272432_100076444 | F075493 | N/A | MQSVQAMHEYMLHHLMTLFAIASQAIHVXNISKVQINIQIYAFDSDVHCKNAFCFLKIITHLYHLIAQMQSLCXDYVDICNMFSVFFSSLISLIFVILRYCNAIACXNHCEEEDASSASXLYFCIFLNEDIQKYHFLDDE |
| Ga0272432_100076449 | F021216 | N/A | MKSRMKSNAMRKEHHELEKALRNYKCSNDDHLNDTFNEHTESISSCDIIKKSNEKEKK |
| Ga0272432_10007645 | F041516 | N/A | MLQTLTDDTQTTQKAIHIHEAYNSSLRDHKVIHEKENLSNIEKMLQMSKECILVEDFNLHHFT |
| Ga0272432_100076452 | F038008 | N/A | MSINQHHLNTFASKQRVYLNDNNSKENVMMTAMKFNXKLNKRLKELTLIITHHEELKELIAKMIHFTDVMTENQECHEKIYKVYNDNQTSLKTVKAMISTKDQTRLQQVQIIHESI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |