NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272432_1000849

Scaffold Ga0272432_1000849


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1000849 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46894
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (23.53%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F038009Metagenome166Y
F086377Metagenome110Y
F089602Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_100084941F086377N/AMIQRFXDQRQRISILDCDSVQISIVHAEVKFFFKFLDEENKDNYLKAIDLNEIFAQIFIQITTKF
Ga0272432_100084943F038009N/AMSSMIKALNSQINYVKLYKRLIELICSRNNRSFKEKRILTLDFXXVFFLNNLKNINRSFLFQMKDKIEHDLFLVKKLSINXLLVSKRRVILLLVSRRETELLVASELRTELLFVSELKTELLLSSEXETKLLLMSELNAELLLVSNL
Ga0272432_100084945F001951GAGMMTMTKLKFIDSLKNEKEKDKDIVETTVIEIMIFEFQELLVIAKMFLTLINEMMTKMKRD
Ga0272432_100084946F089602N/AMKDEXLSFIEVSSEENDDLSEIIDITLQTVNQXEIFHQRTFFLLIKEIVVINKAIHVLLQSFMKI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.