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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031470 Open in IMG/M |
| Scaffold ID | Ga0272432_1000923 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 44107 |
| Total Scaffold Genes | 45 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (20.00%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Lecanoromycetidae | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 160.7 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002432 | Metagenome | 559 | Y |
| F023763 | Metagenome | 208 | Y |
| F038484 | Metagenome | 165 | Y |
| F044227 | Metagenome | 154 | Y |
| F048018 | Metagenome | 148 | Y |
| F058565 | Metagenome | 134 | Y |
| F070710 | Metagenome | 122 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272432_100092310 | F038484 | N/A | MCITKVLFAFXRSSRIFVVLLLRCNLCAEITLMFATHSLYFSHRXFHXSLXYCVIAMLSLVEIIVKKRVHRLHLDCIFASSXMKIFRSIIFLMTSKREMTRLTLVKRAHISLHACLIFCIRSLTQLCSVILFCSMFKXTCNKLMYVSVFKVLMLTLLNASATXCRVXFXSVSSLHFLLNSSSFLSRXCQIDASNVISDLTTAEYTCLAFVKIASHVKISRXLSVSILVTXFISICRRCTSHHSFMFSCIFRIRTSDFDLITEFSIYMLVIMLNLFDFLVKCVSSYFSDANITSXVQTHFAQTSCALLSVLQISSVNLL |
| Ga0272432_100092312 | F070710 | N/A | VRKILDDRKHTKSLLIAKLTTATNNFMIKQSFLQILQYNIRKSLRIQKSFLINREIREFDIVAIQKQDHNNNDSQSFSSAYNFFHLVKNSSSQSRTCIYINKYLRFNQXIVETAKSNICSIRILTRNADNKTQTLRLLNVYNSCSLFITFTKKSSIISRLNELLKNDCKQLIIKDFNLHHSH |
| Ga0272432_100092315 | F058565 | N/A | MMMNCINCSNVDLKMIASNVDSLQENRDARLKHLHNNEENIVNIIDLLIKISTLEKEKSKDHS |
| Ga0272432_100092319 | F048018 | GAG | MIXRRSLSELSTYFLSXKYRXFSCSSHLTKEILLXCCASLQSTSIIXTANLSLISIYFHNVXMKVSAKSSSRFRMFXFSXDLTSSTLNSSISKFIKAKICKSAEIIKNKCNXIESKVMICVXSFMILMSKMSRAKFLTILRFKTXIFKIV |
| Ga0272432_100092320 | F023763 | N/A | MLRIKCIFLFKKIFXTTCQNIQLIIDLVEMISIVIVESKQKLTSMSLTTTQLLNXHEILKIFMICDHLNKINKVFKLXSSFLESANNDHKFFIIDFVVTLDXIMLLQKVSDXMKNFILIVLKENVFKHIVQSIDFYHNLVIXIIMTKNILESEDFLKNVECNLTFLKLNKEYIFSDETSERSSYFTIVINESFIEVREI |
| Ga0272432_100092338 | F002432 | N/A | MKFSDNSNIFSISSMISFYFNKRFHSRISFNLNTTDYETTCERLEARKVDDIVIXMKELLNFDRQQLKKTKLIIEVQINKHRXNVTYEVDDXVXLSFRNVKTTRLCKDLKDKQLDLYQITVKVSIFYHLHLSVSMKHLHSMFSSKLLQLYSKDLLSKQHSESLKSITIEDDEHXEIDDILNFRRYRDRIQYKVKXIDLDRNDEXYYVDKGKFDDLEEVLNEFHKLYSNKSR |
| Ga0272432_10009239 | F044227 | N/A | MMXLQIKSSDDEAYTYALLELIAFAIKNVTRCXLLKLLNNHHHHEESQSSSKNDNENEALEVI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |