NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1001220

Scaffold Ga0272432_1001220


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1001220 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35908
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (5.13%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008735Metagenome328Y
F021216Metagenome219Y
F038008Metagenome166Y
F080688Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_10012202F021216N/AMKSRIKSNATRREHHELEKAFRNLECSDDDHSNDILNEHIESISSCDVIKESDKK
Ga0272432_100122023F008735N/AVSLLIYDESXLDIDDLDSMKEIMIIVHVHALYQTLLSCIQSIFVLLILKYVEKLLESRSNEDNDRVHRKINDKRRLIVQDLCDDLNYHHEKLRIQLYINXRIKNDEXRXDDDIMLLNLILKLLHYAKDLNXIFNHTLSELFNSTLIIDQEIVKXLHLSERITKRDFNVXKRCRKCRSFVMLKTELD
Ga0272432_100122032F080688N/AMLQTLTTRAEMHXTTHSDVYRSSDFENLHEKQTVESMTSQLSEHSIEVQLSNHI
Ga0272432_10012204F038008N/AMKXSYFYMMILXSKSSRVIIVANKKILMNQHHFNTFALKQKVYLNDNNNRENVMMIAMRINXKLNKRLRELILIITHHEELKELIVRAKHLADVMTENQEYYEKIYKVYSDSQTSLKTVKVMILTKDQTRLQXVQIMHKSIQFQEVTLKLH
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