NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1001410

Scaffold Ga0272432_1001410


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1001410 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32356
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (6.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021216Metagenome219Y
F102180Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_10014103F102180N/AMMIAIRINXELNKRLRESTLVITHHEELKELIARMKHLADVVTKNRECHEKIYKVYSDSQTSLKTVKAMISTKDQTYLQXVQIMHKSIQF
Ga0272432_100141032F021216N/AMKSRMKSNAIRREHHKLKKVLRNCERSNDDHSNDTFNEHIESISSCNVIKESDEREKK
Ga0272432_10014104F021216N/AMKSRMKSNAMRREHHELEKALRNRERSDDDHSNNTLNEHIESISSCDVIKESDEREEK
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