NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1001520

Scaffold Ga0272432_1001520


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1001520 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30623
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (15.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008169Metagenome337Y
F008735Metagenome328Y
F009580Metagenome315Y
F089602Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_100152024F008169N/AMLSHSFTEEHFEEFRNRFFQISDADSSKSSSVASFIQKDDESFIEMIILLMFYEIXKTXRLALDEETDQLYELDKQQEDEIKELKTRLQAKEITSSDSIYSERSRSQKISDSSLFTDEKNSTXKNXYGKIQNKLEINVDLFSNKXVKLSYIYSRLFNDAAEITQAKRERDYINLYKIINDFLKKLTQLFNDSNKKVNFRRKYYNLIQEFKKFYKFYTQFQRLSFYLDYHEKQLIADLKDKIHSHLRFVXVNQLVQSDFLKEIRFYLICLNNDQRVIREIKNKIKRVDNLSKTIFHKATIVTQSVDHLKSDQLKSRDVILTSVKEADILVESCFICHKSDHSFKECLDRFTRINVVNNEYDCFDFDSNFN
Ga0272432_10015204F008735N/AMKEIMIIIHVHALYQTLLSCIQLIFVSFILKYVRKLLEFKSNEDSDRICREINDEERLIIQDLCNDSSYHCKRLRIQLYINXRIENNEXRXSDDIMLLNLILKLLHYAKDLDXIFDHTLSELFNSTLIVDQKIVKXLYLSKRITRXDFNIXKRCRKCKSFVMSEIELN
Ga0272432_10015205F089602N/AMKDEXLNFIKISSEENDDLSEIIDITLQTVNQXKIFHQKTFFLLIEKIVIVDKAIHVLLQSFTKI
Ga0272432_10015207F009580GAGMICIQISERDLAQRLNFSCEQXDFFIYTDDVIVVDVHDTQSEELLIXAFFSNFARMLQFAIVAKLSLIADFLDFKNDQNLILNDDNDKA
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