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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031470 Open in IMG/M |
| Scaffold ID | Ga0272432_1001609 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29372 |
| Total Scaffold Genes | 32 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (37.50%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 160.7 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F008169 | Metagenome | 337 | Y |
| F020121 | Metagenome | 225 | Y |
| F023763 | Metagenome | 208 | Y |
| F080690 | Metagenome | 114 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272432_100160910 | F080690 | N/A | MKLSYNLLINDERAVKQFTQSVIENSVEIFRVMHELQNQVQQHDVIISFLFIVFSSSIYIKLNSQFLAMITQIIAQILNNQSLFIIHLSANSVTVFITSRFKKPFDIFKYEKNKDQLNAXKQSLIQRMNMNDDCYLFYQVKIIYVESRLIIDKKTHNLMSQYXVNDLCVIFIFADXQHKLHHYCNNSFKTEDAHLYLRETLKQDMNNFVNYYNLFYQKKECFLMKNFSLIDCLKRNVNYFTQVIVFFXRNFNEIRSFIFY |
| Ga0272432_100160912 | F008169 | N/A | VNCSRIKLILIFFIEDXISLHTSFFFNRQASSFVQFSFQTNLIMFSRSFTEEHFEEFRNHFFQISDADSTKSSSAVSFIHEDDESFTKTIILLMFYEIXKTXSLVLDEETDRLYELNKQQEDEIKELKTRLQAKEITFSDFTYSERSRSQKIPDSLLFTDEKNFTXENXYEKIQNKLEINVNLFSNEXVKLSYIHCRLFNDAVEITQARCERDCVNLYRIIDDFLKELAQLFDNSNKKVNFHRKYYNLIQEFKKFNEFYTQFQRLSFYLNYYKKQLIADLKDKIHFHLXFIXVDQLVQSDFLKEIRFYLIHLNNDQCVIXEIKNKIKRVNNLFKTIFHKVTVVTQSVDHLKSDQLKSRDAILTSVKEADILVESCFIYHKFDHSFKECFDRSTRINAVNNEYDCFDFNSNFDSKN |
| Ga0272432_10016092 | F020121 | GAG | MKKLTEHLDDEMLITQIIYKFNVNFFRRSCFRYFVEDEVXLNAHNLSIAHLTVKLNDYNVDLFKIKRVFKNNSLIIELNLSTFMKIYSIFHVILLSYITSDFLSSQRQKLXKFIVIKNDKRFXYVNSILNFKHDRCYNSSLLKYYIN |
| Ga0272432_10016094 | F023763 | GAG | MSFQNCLMLILMSRIECIFLFKKIFXATCQSIQLIVDLVEMISNVIVESKQKLTSTSLIMIQLLSXHEILKIFVIRDHLDRIDRVFKLXSLFLESANNDHEFFIINLVVTLDXVMLLRKVSDXMKNLVLIILKKNVFEHIVXSIDFYHNLVIXIIVTKNNLESEDFLKSVECNLTFLKSDKEYIFSDEMSKRDNYSTIVINESFIEVREI |
| Ga0272432_10016099 | F001951 | GAG | MIMTKLKFIDSSRNEKERNEDTVKTTVTKVMIFEFKELLVNAKMFLTLMNETMTKMK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |