NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1001665

Scaffold Ga0272432_1001665


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1001665 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28637
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (9.68%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038484Metagenome165Y
F044227Metagenome154Y
F058565Metagenome134Y
F075493Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_100166514F058565N/AMNCRNADSNMIASDVNSSQENRDARLKCLRNDEENIANIIDLQIKISTLEKEKSKDHS
Ga0272432_10016656F075493N/AMQSVXAMHEYMLRHLITLFAVTLQAIHVXNVFKVQISIQIYAFNSDVHCKNAFCFSKIIMHFYHLIAQMQSLCXDCIDVCNAFFVLFSSLISLIFVILCYYDAIACXNNYEEESALFAFQLYLRIFLNENIQKYYFLDDE
Ga0272432_10016658F044227N/AMXLQIKSSDDEACIHALLELIASATKNVTRCXLLKLLNNHHHHEEFQNSNKDDDENEAFEAI
Ga0272432_10016659F038484N/AMCIMRMLSAFXKSSHIFIILLLRCNLCAENALTFVTHSLYFSHCXFHXSLXYCAIVMLSLVEIIVKKRMHHLHLNCIFTSSXMKTFRSIIFLMMSNXEMTXITFVKRTCINLHACLIFCIRSSTQLCSMILFCNMFKXTYNELVYVSVFKVSMLTLLNASATXCKVXFXSVSNLHSLLNSSFFLSRXCQIDALNAISDLIIVEYTCFAFVKIASHVKTSKXLSISILVMXFIFICRRCASHYSFMFSCIFRICTSDFNLITELSIYMLVIMSNLFNFLVKCVSSYFSDANVASXVQAHFAQTSCALLSVLQISSVNLS
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