NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1001705

Scaffold Ga0272432_1001705


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1001705 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28319
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (31.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008735Metagenome328Y
F009580Metagenome315Y
F021026Metagenome220Y
F070710Metagenome122Y
F086377Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_100170511F009580AGCAGMIEVRVKRLKLVDKMICIQISERDLAQKLNFSCRQRDFFIYIDNVTVVNVHDTQSEELLIXAFFSDFAXMLQLAVVAQLSLVADFLDLRNDQSLILNDDNVKA
Ga0272432_100170512F021026N/AMIVFCILRQAQSKVLALTLIDSEVLTYVFMNKFFMQQHYLLLHQLTHSHRLXEFDDQVALIDDITYVIEITMILDEYIERLFFYVTELNQYFIVMSLSXLHHHVINVNFEHNILILSFFFCLNYCYQFLVKIYDFNQQEENFLAXS
Ga0272432_100170514F086377N/AMIQHFXNQKQRILILDCDSVQISIVHAKAKFFFEFLDEENKDDHLRVTDLNEIFAQIFIQITTKF
Ga0272432_100170523F070710N/AMMKQLFLQILQYNIRKSLKIQESFLIDREVHKFNIIVIQKQECNINDLQSFSSAHNFFHLVKNSSFQSRTCIYVNKCLRLNQXTVKTVESNICLIRILTRNTDDKTQMLRLLNVYNLSSLFITFTERFSTISRLNELLKNDCEQIVVENFNLHHSHXERXRCFA
Ga0272432_10017059F008735N/AMKEIMIIVHVYTLYQTLLSCIQSIFVLLILRYVEKLLESRSDEDSDRICREMNDKKRLIVQDLCNDLSYHHKRLRIQFYIDXRTENDERKXSDNIMLSNLILKLSHCTKDLNXIFDHTLSELFNSTLIVNQKIVRXLYLSERITKQDFNVXKRCRKCRSFVMLETELD
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