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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031470 Open in IMG/M |
| Scaffold ID | Ga0272432_1001959 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 25675 |
| Total Scaffold Genes | 31 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (22.58%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 160.7 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F008735 | Metagenome | 328 | Y |
| F019260 | Metagenome | 230 | Y |
| F038009 | Metagenome | 166 | Y |
| F061399 | Metagenome | 131 | Y |
| F074202 | Metagenome | 119 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272432_100195919 | F038009 | N/A | MIKASSFQLNYVKLYKRLIKLICSKDNRSSRKRRISTLDFXXVFFLNDLKNTTKSFLFQMRNKTEXNLFLMNELSINXLFMSKREIILLLVSRXKTELLLVSELRIELLFVSELKTELLLSSEXETRLLFASKLKTELLLLNEXETKLLLASKLSAELLLVNDL |
| Ga0272432_10019592 | F019260 | N/A | MSQFENISNILSSTSLVSINEFITVAQFXTHVNNAFEAXYTFLIELQTXFNDIITQYINXVSVCQQEHEQTQIELKQFQINNEILSEMIQELKSMSRIDIKSEKYSNSELYIEEXEDKLNQFIFKLISKLKLNVNRYSTLEFRLLYEYSRLSKNAVAQALSRMTAQHDKLVTIEQLVALLRQVFDDSDKQEIAQRFISALRMRNRIFIEYLFDFQQHIDAIEYDVVIRKFNLKNELFSELKALLIQMNVSSLNYEQLIIKCQQLNSRYRVTVQNLFKSKAVIHSVSVISTVFAYLVKYATLSTGSKATISSSRDLMNLSIVNMKKQDSLIFEKHQHRMINHLCLYCDKSEHQTAICNSKLKIQLRVVSLFIFAISIDNLAFDTSFVLRKV |
| Ga0272432_100195922 | F001951 | N/A | MMIMTKFKFIDSSRNEKEKDEDTVETTVTKMIIFKFKELLINAKTFLTLMNKMMMKMK |
| Ga0272432_100195924 | F008735 | GAG | MIIIHIHALYQTVLSCIQSIFVSLILRYVKKFLEFKSNENSNRIHKRMKNKKRLIVQDLCNDLNYNCKRLRIQFYINXRIENDEQKQDDNIMLSNLILKLLHYVKDLNXIFNHTLSELFNSTLIVDXKIVKXLHLSERITKXDFNIXKCCRKCRIFCNVRN |
| Ga0272432_10019596 | F061399 | N/A | MNYVNSLSLSIFMNITYKYVLIFVDHLIKMRHLVLITFMKVEEVINCFYAHVXKHHNLLKFFMFNXDTQFIFNVXKHICKMLKIDVKLSTTYHFEINDQIKKVNAIMKHYFXIFINYMQDDXTKXLFKVKFIINNTSSLITLASFFLINLSQNSHLDFKLFESLFKNFMSQAXNKLINVKKFIKKMKKLTEHLRDEMLIVQIIYKFNVNLFHHSYFKYFIENEVXLNACNLSIARLIVKLNDHNIDFFKIKHVFKNNSLIIKLNLSTFMKIHSIFHVTFXIILQVIFFXINVRNLKNVLSSKIMKDSDM |
| Ga0272432_10019598 | F074202 | N/A | MKLXNFKMCVYEXSLFTCXKEIYMYVEKCLRLFYHXLRSQSLFLTKLLEKCVSNFMKTVDCKMNCKMNCKMNCKTIYVSFLLMSSCLLCSDNAFNLALLLNDDFFLKLVISKLRLRVTAELDFKEEVILHCFFFNAKDDDLDSSFNLETATNFIKFLXFIIFHNDXSFFFNLFLSVKCDVTRSKXANAENRAFESEVVVDLAVVDLAVLNNVDNENSLKFENLDCENDMKRSTLIVSSFFSSDIVN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |