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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031470 Open in IMG/M |
| Scaffold ID | Ga0272432_1002139 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 24166 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (22.73%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 160.7 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005901 | Metagenome | 386 | Y |
| F009580 | Metagenome | 315 | Y |
| F019260 | Metagenome | 230 | Y |
| F021026 | Metagenome | 220 | Y |
| F086377 | Metagenome | 110 | Y |
| F089602 | Metagenome | 108 | Y |
| F094625 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272432_100213910 | F086377 | N/A | MIQRFXDQRQRISILDCDSIQISIVHAEAKFFFKFLDEENRDDHLRATDLNEIFAQILIQITTKF |
| Ga0272432_100213918 | F005901 | AGAAG | MNDKLIVNVDQFDNETICIVYMLSRLEDDVAEHIYAXRCHDSSHSYYLIYELFEHLKEIYNEVNKNXKCRHEYNALRQADKFFNVFYFNFIKLFSYLKYDDCTLMNNLQNKINNCLQNALSVCLEDFTSLHXLKIFLQDVNSKQRVNYQLRSKRCTVIVKVTVVSDKRATTLLSAETTSIIDYVKSIIFSTFKSARFSIICYICKISSHLFKNCSQNKINTFASHAFTLRLHEIVISKDKENEKMSSFKNSEAKN |
| Ga0272432_100213922 | F019260 | N/A | QQEHEQTQIELKQSQINNEILSEMIQELKSMSRINIKSEKYSNSELYIEERENKLNQFIFELISKLELNANRYSTFESRLLYEYSRLSRNAVAQALSRMTAQHDKLVMIEQLVVLLRQVFDDSDKQEITQRFISALRMQNRIFIEYLFDFQQHIDAIKYDVVIRKFNLKNELFSELKALLIQMNVSSLNYEQLIIKCQQLNSRYRITVQNLFKSKAVIHFVSVTSTVFAYLVKYATFSTGSKATISSSRNFMNLSIVNMKKQDSLILEKHQHRMINHLCLYCDKSEHQTAICNSKLKIQLQVVSLFALAISIDNLAFNTSLVLRKV |
| Ga0272432_10021395 | F094625 | N/A | MFSYVEISSSYSFAQMKLSHNFLIDDEHAVEQFTQSMIENSVKIFHAMQELQNQVXQHDVIISFSFIVLSSSVYIELNSQFLAMIIQIIAQILNNQSFFIVHLFANSVAVFIAFSFEKLLDISEYERDKNRLNAXEQSLIQRINVNDDHYFFHQVKIIYVESRFIIDKKTHNLMSQYXVNDLCIIFIFADXXYKLHHCCDNSFEAEDAYLYLRETLK |
| Ga0272432_10021396 | F089602 | N/A | MKNEXSSFIEISSEKDDDLSEIIDITLQTINQQEIFHQRIFFLLIKEIVVVDKAIHVLLQSFTKI |
| Ga0272432_10021397 | F009580 | GAG | MICIQISERNLAQKLNFFCKQQDFFIYIDDVIVINVHDMQSEELLIXAFFNDFAXMLQFAVVAQLSLVADFLDLRNDQSFILNDDNDKV |
| Ga0272432_10021398 | F021026 | N/A | MIVFCILRQAQSRVLILALIDSEVSTYVFMNKFFMQQHHLLLHQLTHSCRLQEFDDQVTLIDDIIHIIEITMILDEHIKKLFFYVIELSQYFIIMSLSXLHHHVIDVNFEHNILILSFFFYLNHCCQSLVKIYDLNQQEENFSLEVNKVTFFQSCSQFAHKKQFSSRIIHKK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |