NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1002152

Scaffold Ga0272432_1002152


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1002152 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24045
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (35.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010214Metagenome306Y
F048018Metagenome148Y
F094624Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_10021524F010214GAGMRMSVLFDYDASSLLYSSLTIFYTTMFXFNSXIKDERCFLCIHDACDCNICKAVFSYSMIVIHXAEKYVMKERCTXXKDKVXLYXVTLFFSXFNLYHVDVEXIISINVQSQLFNVLTLINERKCILIVFLSFQFFT
Ga0272432_10021527F048018GAGMIQRRSLFELSTYFLSXKYKXFSSSSHSTRKILLXCYASLQSISIIXAVNLSLISTYFHNVXVKVSAESFSRFKVSXFSXDLMFSILNSLISKFIKVKIYENAEIIKNRCNXIESKVMICDXSFITLMLKTSKVRFSTILKFKT
Ga0272432_10021528F094624N/AMMYYSEINDQIKRINAVMKHYLQVFINYMQNDXAKXLSEVEFVINNTSSSITLTSLFLINLSQNLCLNFKSFEFLFKNFTFQAXNKLINVKEFIKKMKKLTEHLCDEMLIAQIIYKFNVNFSYCSCFKYFVEDEVXLNACNLNIAHFVVKLNDCNVNFFKIKHDFKNNSLIIKLILSAFMKIYSIFYVILLNHIISDFLSNQHQKS
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