NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1002656

Scaffold Ga0272432_1002656


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1002656 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20776
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (96.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008598Metagenome330Y
F034417Metagenome174Y
F058564Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_100265613F008598GGAMAYLYADNSLGDATPAHVTLTTDRVTAAAAGPLADALHAAGVAVERHTFLPVRDEEQHPWGVLLLATDGPPLPLARLVAPATAPPDVASALAAALGVGKRPAPATLQLKADGVFVSVRCRDLIDITRTLDELPAHLARLDTRREERRLVYAEGAWRIDP
Ga0272432_10026565F058564AGGAGMTPIGYLIHGHPLCLSCVGDDDGLDADGAAYARDGHGVALDVAPIHPDDPDDGAPCAGCGQSLAAPPEASVVWTCPACGSADLCVFYSERRMCRVGTRDDTGDPADAAPWPTYEGDEFVDIDPATFAFACDACNTHGIAPRKGGETHALDRCQAA
Ga0272432_10026566F034417GGAGGMPWIVVKPRDAWVQQATDAWAALAPQAPQGAHLRALAAIDHDNFARLIEALTALKPGEVSQELQDLAGLRPVGEVLGMPDRGDADDTDAEIWDW
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